Biophysics resources
Surface Plasmon Resonance (SPR/Biacore)
BioLayer Interferometry (BLI/Octet)
- ForteBio/Sartorius Octet platform
- "Biolayer interferometry for measuring the kinetics of protein–protein interactions and nanobody binding" in Nature Protocols, 2025. doi.org/10.1038/s41596-024-01079-8
Isothermal Titration Calorimetry (ITC)
- MicroCal range (Malvern)
- NITPIC and GUSSI for integration and baseline correction based on SVD treatment of peak shapes, ready for SEDPHAT, see PMID: 22530732.
Circular Dichroism Spectrometry (CD)
- Dichroweb at Birkbeck
- DichroCalc
- K2D3
- Bestsel
- Electromagnetic waves and circular dichroism: an animated tutorial – fantastic visual explanation of the CD phenomenon by András Szilágyi
Mass Photometry
- Refeyn Ltd
- PhotoMol analysis from the European Molecular Biology Laboratory (EMBL) Hamburg Station
Analytical Ultracentrifugation (AUC)
- SEDFIT and SEDPHAT from the NIH with latest software downloads
- GUSSI (for nice graphical output from SEDFIT and SEDPHAT)
- Ultrascan
- Nottingham Centre for Macromolecular Hydrodynamics
- Excellent instructional video: “Assembly, Loading, and Alignment of an Analytical Ultracentrifuge Sample Cell” at the Journal of Visualized Experiments
- SEDNTERP, available in various flavours, also here
- What is the frictional ratio?
- Calculate the frictional ratio from a pdb file using the HullRad server
- Nanolytics Instruments (was Spin Analytical)
- Chemical resistance tables (including epoxy/carbon centrepieces)
- SVEDBERG and DCDT+ from John Philo
Dynamic Light Scattering (DLS)
- Malvern Zetasizer Nano S (includes manuals and free software downloads)
- (e.g. Z-average, polydispersity…)
- Minimum concentration considerations (found within software, under “Tools”)
- Create custom reports (YouTube)
Dynamic Scanning Fluorimetry (DSF, “Thermofluor”)
- “The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability” in Nature Protocols, 2007. PMID: 17853878
- Web-based analysis tool for thermal shift assays
Stopped-flow
General Biophysics
- ε205 calculator (by Anthis & Clore)
- Fluorescence anisotropy/polarisation: theory, method and analysis by Joe Maman
- Hydrodynamic modelling software (HYDRO suite) from José García de la Torre’s lab
- Hydrodynamic parameters from bead models using US-SOMO
- Hydrodynamic parameters using the HullRad server